PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo26G0002300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 335aa    MW: 36597.5 Da    PI: 5.5828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo26G0002300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000432002381255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Spipo26G0002300 200 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 238
                      6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.522188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-10198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.12E-6198242No hitNo description
Gene3DG3DSA:4.10.280.104.1E-7202244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MNRVFQNSTA QQIMGGSPGW WNSMRPPPQQ ASPFLTSSSS TSAVFSQYPQ QTAWHEDQDL  60
PESWSQMLMG GLVGDEDRCN YSPFQAKKID SLEDQALYHS MGTHLSDVKQ EPSENGYLYG  120
YGNEEIPTIR STWSHVLQVS SPGSCVTSLS SNVLDFSGSQ LEGRRQQIDH SECNSTSNGT  180
AVKKARIQPS PSAHSTFKVR KEKLGDRITA LHQLVSPFGK TDTASVLLEA IGYIRFLQSQ  240
IEALCSPYLG NGSGNTRQQQ SVHEESSCIF PEDPGQLLND AGIRKRGSTE KDVEDEAKDL  300
KSRGLCLVPV SCTLHVGNDN GADYWAPSLG GGFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0944737e-38BT094473.1 Soybean clone JCVI-FLGm-24H22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254048.11e-158PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D11e-80BH068_ARATH; Transcription factor bHLH68
TrEMBLD7TBK31e-140D7TBK3_VITVI; Putative uncharacterized protein
STRINGVIT_11s0016g03560.t011e-139(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2167817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-80bHLH family protein